Training & Tutorials
A comprehensive manual on the KOK体育官方网站 C++ toolkit, including its design and development framework, a C++ library reference, software examples and demos, FAQs and release notes. The manual is searchable online and can be downloaded as a series of PDF documents.
- KOK体育官方网站 Education Page
Provides links to tutorials and training materials, including PowerPoint slides and print handouts.
- KOK体育官方网站 Glossary
Part of the KOK体育官方网站 Handbook, this glossary contains descriptions of KOK体育官方网站 tools and acronyms, bioinformatics terms and data representation formats.
- KOK体育官方网站 Handbook
An extensive collection of articles about KOK体育官方网站 databases and software. Designed for a novice user, each article presents a general overview of the resource and its design, along with tips for searching and using available analysis tools. All articles can be searched online and downloaded in PDF format; the handbook can be accessed through the KOK体育官方网站 Bookshelf.
- KOK体育官方网站 Help Manual
Accessed through the KOK体育官方网站 Bookshelf, the Help Manual contains documentation for many KOK体育官方网站 resources, including PubMed, PubMed Central, the Entrez system, Gene, SNP and LinkOut. All chapters can be downloaded in PDF format.
- KOK体育官方网站 Data Specifications
Specifications for KOK体育官方网站 data in ASN.1 or DTD format are available on the Index of data_specs page. The "KOK体育官方网站_data_conversion.html" links to the conversion tool.
A suite of tag sets for authoring and archiving journal articles as well as transferring journal articles from publishers to archives and between archives. There are four tag sets: Archiving and Interchange Tag Set - Created to enable an archive to capture as many of the structural and semantic components of existing printed and tagged journal material as conveniently as possible; Journal Publishing Tag Set - Optimized for archives that wish to regularize and control their content, not to accept the sequence and arrangement presented to them by any particular publisher; Article Authoring Tag Set - Designed for authoring new journal articles; KOK体育官方网站 Book Tag Set - Written specifically to describe volumes for the KOK体育官方网站 online libraries.
- Amino Acid Explorer
This tool allows users to explore the characteristics of amino acids by comparing their structural and chemical properties, predicting protein sequence changes caused by mutations, viewing common substitutions, and browsing the functions of given residues in conserved domains.
This page links to a number of BLAST-related tutorials and guides, including a selection guide for BLAST algorithms, descriptions of BLAST output formats, explanations of the parameters for stand-alone BLAST, directions for setting up stand-alone BLAST on local machines and using the BLAST URL API.
- Coffee Break
Part of the KOK体育官方网站 Bookshelf, Coffee Break combines reports on recent biomedical discoveries with use of KOK体育官方网站 tools. Each report incorporates interactive tutorials that show how KOK体育官方网站 bioinformatics tools are used as a part of the research process.
A tool that allows users to construct an E-utility analysis pipeline using an online form, and then generates a Perl script to execute the pipeline.
- KOK体育官方网站 News
Provides information on new and updated resources and KOK体育官方网站 research and development projects. The News site contains feature articles highlighting services, resource features and tools, as well as frequent postings describing important announcements regarding key datasets and services of interest to the user community. Links to KOK体育官方网站's social media sites along and a list of available RSS feeds and Email listservs are provided.
- PSSM Viewer
Allows users to display, sort, subset and download position-specific score matrices (PSSMs) either from CDD records or from Position Specific Iterated (PSI)-BLAST protein searches. The tool also can align a query protein to the PSSM and highlight positions of high conservation.
A collection of web and flash tutorials on PubMed searching and linking, saving searches in MyKOK体育官方网站, using MeSH and other PubMed services.